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Rethinking Natural Products: What’s Next for Nature-Inspired Drug Discovery?

Introduction. Nature has been humanity’s pharmacy for millennia—think traditional herbal remedies, or blockbuster drugs like morphine and quinine. However, in recent decades, drug discovery focused has on alternative lead discovery methods and engineered biologics. In our new review (January 2014–June 2025) published in Natural Product Reports we ask: what is the current role of natural-product-derived (NP-D) compounds in drug approvals and clinical pipelines?

Link: https://doi.org/10.1039/D5NP00031A

The Big Picture:
– We identified 58 NP-related drugs launched globally between January 2014 and June 2025 (45 NCEs and 13 ADCs).
– Between 2014 and 2024, of the 579 drugs approved globally (388 NCEs, 191 NBEs) we found 56 (≈ 9.7 %) could be classified as NP or NP-D drugs.
– At the end of December 2024, there were 125 NP or NP-D compounds undergoing clinical trials or in the registration phase, including 33 new pharmacophores not previously seen in approved drugs. However, only one of these new pharmacophores in active clinical development has been discovered in the last 15 years.

Key Take-aways.

(1) Despite the decline in emphasis on natural products, they still contribute meaningfully (~10 %) to approved drugs.

(2) The pipeline is active—but innovation (in terms of new pharmacophores) is slow. – To unlock future NP-derived success, renewed emphasis on bioassay-guided isolation and mode-of-action elucidation is needed.

Why it Matters. For researchers, entrepreneurs and policymakers: natural products offer chemical diversity and biological relevance that synthetic libraries often struggle to match. Our review suggests that while NP-D compounds aren’t dominating the field, they remain a valuable strategic option. Re-investing in the foundational work (isolation, mechanism, natural-source exploration) could yield the next generation of breakthrough therapeutics.

Looking Ahead:

(1) Better integration of genomics, metabolomics and modern analytics with natural product discovery.

(2) Strategic partnerships between academia, industry and natural-source repositories to accelerate NP pipelines.

(3) Encourage early-phase investment in NP scaffolds and biologically-rich extracts.

(4) Further integration of machine learning, genomics, metabolomics and modern analytics with NP discovery.

Conclusion. Nature still holds surprises—and in the era of multi-drug resistant pathogens, complex diseases and the need for new therapeutic modalities, NP-derived drugs will continue to play an important role for the foreseeable future. I hope this review spurs renewed interest, investment and collaboration across the NP drug discovery ecosystem.

Awarded the 2024 Journal of Antibiotics Ōmura Award for Reviews’ Medal

I am pleased to announce that we (Mark S. Butler, Ian R. Henderson, Robert J. Capon and Mark A. T. Blaskovich) have been awarded the 2024 Journal of Antibiotics Ōmura Award for Reviews’ Medal for the review “Antibiotics in the clinical pipeline as of December 2022”.

It is an honour to receive an award named after Prof. Satoshi Ōmura, the 2015 Nobel Laureate and Japanese microbiologist renowned for his discovery of avermectins, which led to the development of ivermectin—a breakthrough that has transformed global health by combating parasitic diseases such as river blindness and lymphatic filariasis. His pioneering work at Kitasato University, Tokyo, exemplifies the power of natural product research in saving millions of lives.

The natural product hygromycin A (code FP-100, Flightpath Biosciences) is in clinical development for the treatment of Lyme Disease

Flightpath Biosciences has begun human clinical testing for FP-100 (hygromycin A), which has potent activity against several spirochete Gram-negative bacteria such as Borrelia burgdorferi (Lyme disease) and Treponema pallidum (syphilis). Other spirochete-driven diseases include yaws (T. pallidum pertenue), advanced periodontal disease (T. denticola), and leptospirosis (Leptospira spp.). Spirochete bacteria have non-standard outer membranes compared with typical Gram-negative bacteria. These consist of an outer phospholipid bilayer (enriched in phosphatidylcholine and phosphatidylglycerol, lacking lipopolysaccharide (LPS)) with abundant lipoproteins such as OspA and OspC.

Hygromycin A was first discovered in the 1950s but overlooked due to the era’s focus on broad-spectrum antibiotics. Hygromycin A inhibits bacterial protein synthesis via ribosomal 23S rRNA binding and its structure is not currently represented in approved antibiotics. Several research programs have investigated hygromycin A analogues, including a Pfizer program that reported a more potent analogue CE-156811 in 2011, but none have made it clinical trials.

Structures of hygromycin A and synthetic analogue CE-156811, along with stylised picture of a tick with a tablet (created by Grok and MSB)

Using bioassay guided isolation to identify compounds with selective activity against B. burgdorferi over Staphylococcus aureus, Kim Lewis’s team at Northeastern University rediscovered hygromycin A (published in Cell in 2021). Promisingly, it showed in vitro and in vivo activity against B. burgdorferi. In addition, hygromycin A does not disrupt the growth of beneficial gut bacteria, unlike current treatments such as doxycycline. It was also shown that hygromycin A enters the bacterium via a nucleoside transporter, which is not present in most other bacteria. Flightpath Biosciences licensed hygromycin A in 2021 and a phase I trial (ACTRN12623001153606) was completed in March 2025 (results pending).

In North America and Europe, Lyme disease is caused by the B. burgdorferi sensu lato complex (including B. burgdorferi sensu stricto, B. afzelii, and B. garinii), transmitted by Ixodes ticks. Diagnosis is based on characteristic symptoms, history of exposure, and serology/PCR. Lyme disease affects an estimated 476,000 people annually in the U.S. alone, with up to 20% of patients experiencing persistent symptoms due to treatment limitations. However, in other countries such as Australia, where B. burgdorferi is not endemic, there is debate about what causes “Lyme-like illness”. Some Australians who have not travelled internationally develop chronic, multi-system illnesses after tick bites, but the cause is uncertain.

In conclusion, with its B. burgdorferi (spirochete) and microbiome-sparing selectivity, hygromycin A (FP-100) represents a promising advance in the treatment of Lyme disease. Its development highlights the value of continually revisiting natural products to address persistent global health challenges.

#LymeDisease #Antibiotics #Antibacterial #AntibioticInnovation #Biotech #InfectiousDisease #NaturalProducts #Actinomycetes #Bacteria

AD109 Phase III Breakthrough: A Potential Game-Changer for Sleep Apnea Treatment

“Opening”. Imagine waking up exhausted, struggling to breathe at night, and disrupting your partner’s sleep. For millions with Obstructive Sleep Apnea (OSA), this is reality. AD109, a once-daily oral therapy that combines the selective norepinephrine reuptake inhibitor atomoxetine with the antimuscarinic agent aroxybutynin, is being developed by Apnimed and has now delivered compelling Phase III results (also see recent commentary). With many patients struggling to tolerate CPAP masks, an effective oral pill could offer a welcome and transformational alternative.

How AD109 Compares to Emerging OSA Treatments:

Zepbound (tirzepatide): Approved for OSA in obese patients, effective with CPAP but reliant on weight loss, limiting its use for non-obese individuals.

Sunosi (solriamfetol): Targets daytime sleepiness in OSA but doesn’t address airway obstruction.

Orexin Antagonists (e.g., lemborexant): In early development for insomnia, with unproven efficacy in OSA

Unlike these, AD109 directly targets the neuromuscular cause of OSA, offering a non-invasive, weight-independent solution.

Closing Thought. As a potential first-in-class therapy, AD109 could redefine OSA care with a convenient oral solution. If approved, it may offer a broadly accessible alternative to CPAP or weight-dependent drugs.

Turpentine, Autoxidation and Monoterpene Hydroperoxides: A Sensitive Story

🧪 Exploring how natural product chemistry can trigger unexpected occupational skin reactions

As someone passionate about natural products and workplace safety, I’ve always been mindful of autoxidation—and I recently discovered it’s responsible for turpentine dermatitis. This skin reaction results from exposure to turpentine, a solvent derived from pine resin commonly used in paints, varnishes, and cleaning products.

What is Turpentine Dermatitis?

This condition typically presents as irritant contact dermatitis (redness, itching, scaling) or, in some cases, allergic contact dermatitis (blistering, swelling), following direct contact with turpentine or its vapours. While it’s less common today due to safer alternatives, it remains a risk for painters, artists, and industrial workers. Prevention involves protective gear, proper ventilation, and immediate washing of skin after exposure.

🔬 What is Autoxidation and The Role of Monoterpene Hydroperoxides?

A key culprit in allergic reactions is monoterpene hydroperoxides (ref. 1), formed when components of turpentine (such as Δ-3-carene, Figure 1) oxidise upon exposure to air or light—a process known as autoxidation (ref. 2). In natural products research, we often isolate the corresponding reduced alcohols. These hydroperoxides are potent skin sensitisers, triggering immune responses that cause severe itching and inflammation. They may also act as irritants, worsening skin damage. To minimise oxidation, turpentine should always be stored in airtight, dark containers.

Figure 1. Autoxidation products of the major monoterpene, (+)-3-carene, in many turpentines (Image made by Grok and MSB)

💡 Why It Matters…

Although turpentine use has declined, monoterpene hydroperoxides remain relevant in essential oils and pine-derived products, posing ongoing risks for sensitisation.

Whenever natural products with allylic alcohols or peroxides are isolated, consider the possibility that they are autoxidation products. Also be mindful of autoxidation during storage—store potential candidates under argon and in the dark where possible.

References

1. One hundred years of allergic contact dermatitis due to oxidized terpenes📘Contact Dermatitis, 2021, 85: 627–636 🔗 https://doi.org/10.1111/cod.13962

    2. Autoxidation vs. antioxidants – the fight for forever 📘Chemical Society Reviews, 2021, 50: 7343–7358 🔗 https://doi.org/10.1039/D1CS00265A

    Enmetazobactam: Building on a Legacy to Combat Resistance

    🦠 Since the introduction of penicillins in the 1940s, β-lactam antibiotics have been a cornerstone of modern medicine. However, bacteria quickly fought back by producing β-lactamase enzymes that degrade these antibiotics before they can exert their effect. To overcome this, β-lactamase inhibitors (BLIs) were developed to be co-administered with β-lactam antibiotics, protecting them by irreversibly binding and inactivating β-lactamase enzymes — thereby restoring the antibiotics’ ability to target penicillin-binding proteins (PBPs) and kill the bacteria.

    ⚙️The discovery of the first BLI, clavulanic acid from Streptomyces clavuligerus, was a key breakthrough. Most people have been prescribed Augmentin®, the combination of amoxicillin and clavulanic acid that has been in use since 1981. This was followed by synthetic inhibitors like sulbactam and tazobactam, introduced in the mid-1980s and early 1990s respectively. More recently, two new classes of non-β-lactam inhibitors, diazabicyclooctanes (DBOs) and boronates, have been developed.

    💡Fast forward to the approval in February 2024 of a new BLI/β-lactam combination: enmetazobactam + cefepime (marketed as Exblifep®) has now been approved in the USA, Europe, and India for the treatment of complicated urinary tract infections (cUTIs). The enmetazobactam story began in India, where researchers at Orchid Research Laboratories identified that adding a methyl group to the triazole ring of tazobactam created a zwitterionic BLI. This small chemical change dramatically improved bacterial penetration and pharmacokinetic properties. Allecra Therapeutics (headquartered in Germany with operations in France) led the clinical development.

    Structures of clavulanic acid, tazobactam, enmetazobactam; background image created by myself and Grok showing lysed and un-lysed bacteria

    🌟 Enmetazobactam is a great example of how thoughtful chemical modifications, combined with an understanding of resistance mechanisms, can deliver clinical impact.

    #AMR #IndiaInnovation #Antibiotics #DrugDevelopment #InfectiousDiseases #Innovation